species:   Rhsol
pid:       PID0580
parent:    Rhi-milR-164
paralog:   
locus:     KB317742.1:102330-102417
matures:   ['UUGGAUAUGUGGUACAAGCGAG', 'UGUUUUAAUGUCUCGGUAUCCAAAA']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317742.1:102330-102417

0 out of bounds
33 alignments
32 proper strand
31 stranded perfect matches

             ****************************             *************************         
UUGUGACGCUGAGUCUUGUUUUAAUGUCUCGGUAUCCAAAAGGAUUAAAUCAACUGUUGGAUAUGUGGUACAAGCGAGGUUUGUCAUA
.((((((...((((((((((....(((((..((((((((.((...........)).))))))))..)).)))))))))))))))))))
--------------------------------------------------------UUGGAUAUGUGGUACAAGCGAG---------- l=22 a=0 c
----------------UGUUUUAAUGUCUCGGUAUCCAAAA----------------------------------------------- l=25 a=0 c*
--------------------------------------------------------UUGGAUAUGUGGUACAAGCGAGG--------- l=23 a=10 ma
---------------UUGUUUUAAUGUCUCGGUAUCCAAAA----------------------------------------------- l=26 a=0 ma*

--------------------UUAAUGUCUCGGUAUCCAAAAGG--------------------------------------------- l=23 a=1 
---------------------UAAUGUCUCGGUAUCCAAAAu---------------------------------------------- l=21 a=1 
---------------------UAAUGUCUCGGUAUCCAAAAG---------------------------------------------- l=21 a=1 
----------------------AAUGUCUCGGUAUCCAAAAGG--------------------------------------------- l=21 a=1 
----------------------AAUGUCUCGGUAUCCAAAAGGA-------------------------------------------- l=22 a=1 
-----------------------AUGUCUCGGUAUCCAAAAGGA-------------------------------------------- l=21 a=1 
-------------------------------------AAAAGGAUUAAAUCAACUGUUGGA--------------------------- l=24 a=1 
--------------------------------------------------CAACUGUUGGAUAUGUGGUACAAGCGA----------- l=27 a=1 
--------------------------------------------------CAACUGUUGGAUAUGUGGUACAAGCGAG---------- l=28 a=2 
----------------------------------------------------ACUGUUGGAUAUGUGGUACAAGC------------- l=23 a=1 
-----------------------------------------------------CUGUUGGAUAUGUGGUACAAGCGAG---------- l=25 a=1 
-----------------------------------------------------CUGUUGGAUAUGUGGUACAAGCGAGG--------- l=26 a=1 
-----------------------------------------------------CUGUUGGAUAUGUGGUACAAGCGAGGU-------- l=27 a=1 
--------------------------------------------------------UUGGAUAUGUGGUACAAGCGAGG--------- l=23 a=10 (ma)
--------------------------------------------------------UUGGAUAUGUGGUACAAGCGAGGU-------- l=24 a=2 
--------------------------------------------------------UUGGAUAUGUGGUACAAGCGAGGUU------- l=25 a=1 
--------------------------------------------------------UUGGAUAUGUGGUACAAGCGAGGUUUGUC--- l=29 a=1 
---------------------------------------------------------UGGAUAUGUGGUACAAGCGAGG--------- l=22 a=1 
---------------------------------------------------------UGGAUAUGUGGUACAAGCGAGGU-------- l=23 a=1 
---------------------------------------------------------UGGAUAUGUGGUACAAGCGAGGUU------- l=24 a=2 

mb-01011
ax-1001011
ku-01
ss-101111101100
fn-111
